GFZ Data Services

Released
Software

river-clusters: Clustering river profiles from topographic data

Cite as:

Clubb, Fiona; Bookhagen, Bodo; Rheinwalt, Aljoscha (2019): river-clusters: Clustering river profiles from topographic data. V. 1.0. GFZ Data Services. http://doi.org/10.5880/fidgeo.2019.006

Status

I   N       R   E   V   I   E   W : Clubb, Fiona; Bookhagen, Bodo; Rheinwalt, Aljoscha (2019): river-clusters: Clustering river profiles from topographic data. V. 1.0. GFZ Data Services. http://doi.org/10.5880/fidgeo.2019.006

Abstract

This software package contains code for performing agglomerative hierarchical clustering on river long profiles extracted from topographic data. The software requires initial topographic analysis to extract river profiles based on the Edinburgh Land Surface Topographic Tools package. Detailed documentation and tutorials for installation and running the code can be found at https://lsdtopotools.github.io/LSDTT_documentation/. The package written in Python and based on the scipy cluster package. The development version of the code can be found on GitHub (https://github.com/UP-RS-ESP/river-clusters) along with full instructions on how to install and run the code.

Contact

Keywords

python, agglomerative hierarchical clustering, topographic analysis, geomorphology

GCMD Science Keywords

More Metadata

  • iso19115:  /  download xml
    • MD_Metadata (xsi:schemaLocation=http://www.isotc211.org/2005/gmd http://www.isotc211.org/2005/gmd/gmd.xsd)
      • fileIdentifier
        • CharacterString: doi:10.5880/fidgeo.2019.006
      • language
        • LanguageCode (codeList=http://www.loc.gov/standards/iso639-2/ codeListValue=eng): eng
      • characterSet
        • MD_CharacterSetCode (codeList=http://www.isotc211.org/2005/resources/codeList.xml#MD_CharacterSetCode codeListValue=utf8): 
      • hierarchyLevel
        • MD_ScopeCode (codeList=http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#MD_ScopeCode codeListValue=): 
      • hierarchyLevelName
        • CharacterString: 
      • contact
        • CI_ResponsibleParty
          • organisationName
            • CharacterString: GFZ German Research Centre for Geosciences
          • contactInfo
            • CI_Contact
              • address
                • CI_Address
                  • electronicMailAddress
                    • CharacterString: 
              • onlineResource
                • CI_OnlineResource
                  • linkage
                    • URL: http://www.gfz-potsdam.de/
                  • function
                    • CI_OnLineFunctionCode (codeList=http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#CI_OnLineFunctionCode codeListValue=information): information
          • role
            • CI_RoleCode (codeList=http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#CI_RoleCode codeListValue=pointOfContact): pointOfContact
      • dateStamp
        • Date: 2019-08-12
      • referenceSystemInfo
        • MD_ReferenceSystem
          • referenceSystemIdentifier
            • RS_Identifier
              • code
                • CharacterString: urn:ogc:def:crs:EPSG:4326
      • identificationInfo
        • MD_DataIdentification
          • citation
            • CI_Citation
              • title
                • CharacterString: river-clusters: Clustering river profiles from topographic data
              • date
                • CI_Date
                  • date
                    • Date: 2019-02-05
                  • dateType
                    • CI_DateTypeCode (codeList=http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#CI_DateTypeCode codeListValue=creation): creation
              • identifier
                • MD_Identifier
                  • code
                    • CharacterString: doi:10.5880/fidgeo.2019.006
              • citedResponsibleParty (xlink:href=http://orcid.org/0000-0003-1135-1765)
                • CI_ResponsibleParty
                  • individualName
                    • CharacterString: Clubb, Fiona
                  • organisationName
                    • CharacterString: University of Potsdam, Potsdam, Germany
                  • role
                    • CI_RoleCode (codeList=http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#CI_RoleCode codeListValue=http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#CI_RoleCode_author): author
              • citedResponsibleParty (xlink:href=http://orcid.org/0000-0003-1323-6453)
                • CI_ResponsibleParty
                  • individualName
                    • CharacterString: Bookhagen, Bodo
                  • organisationName
                    • CharacterString: University of Potsdam, Potsdam, Germany
                  • role
                    • CI_RoleCode (codeList=http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#CI_RoleCode codeListValue=http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#CI_RoleCode_author): author
              • citedResponsibleParty (xlink:href=http://orcid.org/0000-0002-8106-5927)
                • CI_ResponsibleParty
                  • individualName
                    • CharacterString: Rheinwalt, Aljoscha
                  • organisationName
                    • CharacterString: University of Potsdam, Potsdam, Germany
                  • role
                    • CI_RoleCode (codeList=http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#CI_RoleCode codeListValue=http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#CI_RoleCode_author): author
          • abstract
            • CharacterString: This software package contains code for performing agglomerative hierarchical clustering on river long profiles extracted from topographic data. The software requires initial topographic analysis to extract river profiles based on the Edinburgh Land Surface Topographic Tools package. Detailed documentation and tutorials for installation and running the code can be found at https://lsdtopotools.github.io/LSDTT_documentation/. The package written in Python and based on the scipy cluster package. The development version of the code can be found on GitHub (https://github.com/UP-RS-ESP/river-clusters) along with full instructions on how to install and run the code.
          • status
            • MD_ProgressCode (codeList=http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#MD_ProgressCode codeListValue=Complete): Complete
          • pointOfContact
            • CI_ResponsibleParty
              • individualName
                • CharacterString: Clubb, Fiona
              • organisationName
                • CharacterString: University of Potsdam, Potsdam, Germany
              • contactInfo
                • CI_Contact
                  • address
                    • CI_Address
                      • electronicMailAddress
                        • CharacterString: clubb(_at_)uni-potsdam.de
              • role
                • CI_RoleCode (codeList=http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#CI_RoleCode codeListValue=http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#CI_RoleCode_pointOfContact): pointOfContact
          • descriptiveKeywords
            • MD_Keywords
              • keyword
                • CharacterString: python
              • keyword
                • CharacterString: agglomerative hierarchical clustering
              • keyword
                • CharacterString: topographic analysis
              • keyword
                • CharacterString: geomorphology
          • descriptiveKeywords
            • MD_Keywords
              • keyword
                • CharacterString: EARTH SCIENCE SERVICES > MODELS > DIGITAL ELEVATION/DIGITAL TERRAIN MODELS
              • keyword
                • CharacterString: EARTH SCIENCE > LAND SURFACE > GEOMORPHOLOGY
              • thesaurusName
                • CI_Citation
                  • title
                    • CharacterString: NASA/GCMD Earth Science Keywords
                  • date
                    • CI_Date
                      • date (gco:nilReason=missing): 
                      • dateType
                        • CI_DateTypeCode (codeList=http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#CI_DateTypeCode codeListValue=publication): publication
          • resourceConstraints (xlink:href=https://www.gnu.org/licenses/gpl-3.0.html)
            • MD_Constraints
              • useLimitation
                • CharacterString: GNU General Public License, Version 3, 29 June 2007, Copyright © 2019 Fiona Clubb, University of Potsdam, Potsdam, Germany
          • resourceConstraints
            • MD_LegalConstraints
              • accessConstraints
                • MD_RestrictionCode (codeList=http://www.isotc211.org/2005/resources/codeList.xml#MD_RestrictionCode codeListValue=otherRestrictions): 
              • otherConstraints
                • CharacterString: GNU General Public License, Version 3, 29 June 2007, Copyright © 2019 Fiona Clubb, University of Potsdam, Potsdam, Germany
          • resourceConstraints
            • MD_SecurityConstraints
              • classification
                • MD_ClassificationCode (codeList=http://www.isotc211.org/2005/resources/codeList.xml#MD_ClassificationCode codeListValue=unclassified): 
          • aggregationInfo
            • MD_AggregateInformation
              • aggregateDataSetIdentifier
                • RS_Identifier
                  • code
                    • CharacterString: 10.1029/2019JF005025
                  • codeSpace
                    • CharacterString: DOI
              • associationType
                • DS_AssociationTypeCode (codeList=http://datacite.org/schema/kernel-4 codeListValue=IsSupplementTo): IsSupplementTo
          • language
            • CharacterString: eng
      • distributionInfo
        • MD_Distribution
          • transferOptions
            • MD_DigitalTransferOptions
              • onLine
                • CI_OnlineResource
                  • linkage
                    • URL: http://dx.doi.org/doi:10.5880/fidgeo.2019.006
                  • protocol
                    • CharacterString: WWW:LINK-1.0-http--link
                  • name
                    • CharacterString: Download
                  • description
                    • CharacterString: Download
                  • function
                    • CI_OnLineFunctionCode (codeList=http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#CI_OnLineFunctionCode codeListValue=http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#CI_OnLineFunctionCode_download): download
  • datacite:  /  download xml
    • resource (xsi:schemaLocation=http://datacite.org/schema/kernel-4 http://schema.datacite.org/meta/kernel-4/metadata.xsd)
      • identifier (identifierType=DOI): 10.5880/fidgeo.2019.006
      • creators
        • creator
          • creatorName: Clubb, Fiona
          • givenName: Fiona
          • familyName: Clubb
          • nameIdentifier (nameIdentifierScheme=ORCID): 0000-0003-1135-1765
          • affiliation: University of Potsdam, Potsdam, Germany
        • creator
          • creatorName: Bookhagen, Bodo
          • givenName: Bodo
          • familyName: Bookhagen
          • nameIdentifier (nameIdentifierScheme=ORCID): 0000-0003-1323-6453
          • affiliation: University of Potsdam, Potsdam, Germany
        • creator
          • creatorName: Rheinwalt, Aljoscha
          • givenName: Aljoscha
          • familyName: Rheinwalt
          • nameIdentifier (nameIdentifierScheme=ORCID): 0000-0002-8106-5927
          • affiliation: University of Potsdam, Potsdam, Germany
      • titles
        • title (xml:lang=en): river-clusters: Clustering river profiles from topographic data
      • publisher: GFZ Data Services
      • publicationYear: 2019
      • subjects
        • subject: python
        • subject: agglomerative hierarchical clustering
        • subject: topographic analysis
        • subject: geomorphology
        • subject (schemeURI=http://gcmdservices.gsfc.nasa.gov/kms/concepts/concept_scheme/sciencekeywords subjectScheme=NASA/GCMD Earth Science Keywords xml:lang=en): EARTH SCIENCE SERVICES > MODELS > DIGITAL ELEVATION/DIGITAL TERRAIN MODELS
        • subject (schemeURI=http://gcmdservices.gsfc.nasa.gov/kms/concepts/concept_scheme/sciencekeywords subjectScheme=NASA/GCMD Earth Science Keywords xml:lang=en): EARTH SCIENCE > LAND SURFACE > GEOMORPHOLOGY
      • dates
        • date (dateType=Created): 2019-02-05
      • language: en
      • resourceType (resourceTypeGeneral=Software): 
      • relatedIdentifiers
        • relatedIdentifier (relatedIdentifierType=DOI relationType=IsSupplementTo): 10.1029/2019JF005025
      • sizes
        • size: 4 Files
      • formats
        • format: application/octet-stream
        • format: application/octet-stream
        • format: application/octet-stream
        • format: application/octet-stream
      • version: 1.0
      • rightsList
        • rights (rightsURI=https://www.gnu.org/licenses/gpl-3.0.html): GNU General Public License, Version 3, 29 June 2007, Copyright © 2019 Fiona Clubb, University of Potsdam, Potsdam, Germany
      • descriptions
        • description (descriptionType=Abstract)
          • br: 
  • dif:  /  download xml
    • DIF (xsi:schemaLocation=http://gcmd.gsfc.nasa.gov/Aboutus/xml/dif/ http://gcmd.nasa.gov/Aboutus/xml/dif/dif_v9.8.2.xsd)
      • Entry_ID: 10.5880/fidgeo.2019.006
      • Entry_Title: river-clusters: Clustering river profiles from topographic data
      • Data_Set_Citation
        • Dataset_Creator: Clubb, Fiona; Bookhagen, Bodo; Rheinwalt, Aljoscha
        • Dataset_Title: river-clusters: Clustering river profiles from topographic data
        • Dataset_Release_Date: 2019
        • Dataset_Release_Place: Potsdam, Germany
        • Dataset_Publisher: GFZ Data Services
        • Online_Resource: http://dx.doi.org/10.5880/fidgeo.2019.006
      • Parameters
        • Category: EARTH SCIENCE SERVICES
        • Topic: MODELS
        • Term: DIGITAL ELEVATION/DIGITAL TERRAIN MODELS
      • Parameters
        • Category: EARTH SCIENCE
        • Topic: LAND SURFACE
        • Term: GEOMORPHOLOGY
      • ISO_Topic_Category: geoscientificInformation
      • Keyword: python
      • Keyword: agglomerative hierarchical clustering
      • Keyword: topographic analysis
      • Keyword: geomorphology
      • Data_Center
        • Data_Center_Name
          • Short_Name: Deutsches GeoForschungsZentrum GFZ
          • Long_Name: GFZ
        • Personnel
          • Role: DATA CENTER CONTACT
          • Last_Name: Deutsches GeoForschungsZentrum GFZ
      • Summary
        • Abstract: This software package contains code for performing agglomerative hierarchical clustering on river long profiles extracted from topographic data. The software requires initial topographic analysis to extract river profiles based on the Edinburgh Land Surface Topographic Tools package. Detailed documentation and tutorials for installation and running the code can be found at https://lsdtopotools.github.io/LSDTT_documentation/. The package written in Python and based on the scipy cluster package. The development version of the code can be found on GitHub (https://github.com/UP-RS-ESP/river-clusters) along with full instructions on how to install and run the code.
      • Metadata_Name: DIF
      • Metadata_Version: 9.8.2
  • escidoc:  /  download xml
    • resource
      • title (xml:lang=en): river-clusters: Clustering river profiles from topographic data
      • date (dateType=Created): 2019-02-05
      • creator
        • creatorName: Clubb, Fiona
        • givenName: Fiona
        • familyName: Clubb
        • nameIdentifier (nameIdentifierScheme=ORCID): 0000-0003-1135-1765
        • affiliation: University of Potsdam, Potsdam, Germany
      • creator
        • creatorName: Bookhagen, Bodo
        • givenName: Bodo
        • familyName: Bookhagen
        • nameIdentifier (nameIdentifierScheme=ORCID): 0000-0003-1323-6453
        • affiliation: University of Potsdam, Potsdam, Germany
      • creator
        • creatorName: Rheinwalt, Aljoscha
        • givenName: Aljoscha
        • familyName: Rheinwalt
        • nameIdentifier (nameIdentifierScheme=ORCID): 0000-0002-8106-5927
        • affiliation: University of Potsdam, Potsdam, Germany

Files

License

GNU General Public License, Version 3, 29 June 2007, Copyright © 2019 Fiona Clubb, University of Potsdam, Potsdam, Germany

Software Description

Supplement to