Released
Software

Generating circumferential images of tomographic drill-core scans

Cite as:

Mills, Steven; Williams, Jack (2017): Generating circumferential images of tomographic drill-core scans. GFZ Data Services. https://doi.org/10.5880/ICDP.5052.005

Status

I   N       R   E   V   I   E   W : Mills, Steven; Williams, Jack (2017): Generating circumferential images of tomographic drill-core scans. GFZ Data Services. https://doi.org/10.5880/ICDP.5052.005

Abstract

This code (nwrap.ijm) can be used to generate an 'unrolled' circumferential image of a tomographic drill-core scan, such as an X-ray Computed Tomography (CT) scan. The resulting image is analogous to those produced by a DMT CoreScan system®. By comparing such images to geographically references borehole televiewer data, it may be used to reorientate drill-core back into geographic space (Williams et al. submitted).


This code should be installed and run as a plugin on ImageJ/Fiji. Full instructions are given in the code and in the Appendix A of Williams et al. (submitted). Examples of unrolled CT scans can be found at Williams et al (2017, http://doi.org/10.5880/ICDP.5052.004).


Authors

  • Mills, Steven;University of Otago, Dunedin, New Zealand
  • Williams, Jack;University of Otago, Dunedin, New Zealand

Contact

Keywords

Drill-core reorientation, Tomographic core scanning, ICDP, International Continental Drilling Programme, DFDP, Deep Fault Drilling Project, drilling

GCMD Science Keywords

More Metadata

  • datacite:  /  download xml
    • resource (xsi:schemaLocation=http://datacite.org/schema/kernel-4 http://schema.datacite.org/meta/kernel-4.3/metadata.xsd)
      • identifier (identifierType=DOI): 10.5880/ICDP.5052.005
      • creators
        • creator
          • creatorName: Mills, Steven
          • affiliation: University of Otago, Dunedin, New Zealand
        • creator
          • creatorName: Williams, Jack
          • nameIdentifier (nameIdentifierScheme=ORCID): 0000-0001-6669-308X
          • affiliation: University of Otago, Dunedin, New Zealand
      • titles
        • title: Generating circumferential images of tomographic drill-core scans
      • publisher: GFZ Data Services
      • publicationYear: 2017
      • subjects
        • subject: Drill-core reorientation
        • subject: Tomographic core scanning
        • subject: ICDP
        • subject: International Continental Drilling Programme
        • subject: DFDP
        • subject: Deep Fault Drilling Project
        • subject (subjectScheme=GEMET - INSPIRE themes, version 1.0): drilling
        • subject (subjectScheme=NASA/GCMD Earth Science Keywords): EARTH SCIENCE SERVICES > DATA ANALYSIS AND VISUALIZATION > VISUALIZATION/IMAGE PROCESSING
      • contributors
        • contributor (contributorType=ContactPerson)
          • contributorName: Williams, Jack
          • nameIdentifier (nameIdentifierScheme=ORCID): 0000-0001-6669-308X
          • affiliation: University of Otago, Dunedin, New Zealand
        • contributor (contributorType=ContactPerson)
          • contributorName: Williams, Jack
          • affiliation: University of Otago, Dunedin, New Zealand
      • resourceType (resourceTypeGeneral=Software): Software
      • relatedIdentifiers
        • relatedIdentifier (relatedIdentifierType=DOI relationType=IsPartOf): 10.5880/ICDP.5052.004
        • relatedIdentifier (relatedIdentifierType=DOI relationType=References): 10.1016/j.jsg.2016.07.006
        • relatedIdentifier (relatedIdentifierType=DOI relationType=References): 10.5194/sd-22-35-2017
        • relatedIdentifier (relatedIdentifierType=DOI relationType=IsSupplementTo): 10.5194/se-2017-112
      • sizes: 
      • formats: 
      • rightsList
        • rights (rightsURI=https://www.apache.org/licenses/LICENSE-2.0): Apache License, Version 2.0 (ALv2)
      • descriptions
        • description (descriptionType=Abstract)
          • br: 
          • br: 
          • br: 
          • br: 
          • br: 
          • br: 
  • iso19115:  /  download xml
    • MD_Metadata (xsi:schemaLocation=http://www.isotc211.org/2005/gmd http://www.isotc211.org/2005/gmd/gmd.xsd)
      • fileIdentifier
        • CharacterString: 10.5880/ICDP.5052.005
      • language
        • LanguageCode (codeList=http://www.loc.gov/standards/iso639-2/ codeListValue=eng): eng
      • characterSet
        • MD_CharacterSetCode (codeListValue=utf8 codeList=http://www.isotc211.org/2005/resources/codeList.xml#MD_CharacterSetCode): 
      • hierarchyLevel
        • MD_ScopeCode (codeList=http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#MD_ScopeCode codeListValue=dataset): dataset
      • hierarchyLevelName
        • CharacterString: 
      • contact
        • CI_ResponsibleParty
          • organisationName
            • CharacterString: GFZ German Research Centre for Geosciences
          • contactInfo
            • CI_Contact
              • address
                • CI_Address
                  • electronicMailAddress
                    • CharacterString: datapub(_at_)gfz-potsdam.de
              • onlineResource
                • CI_OnlineResource
                  • linkage
                    • URL: http://www.gfz-potsdam.de
                  • name
                    • CharacterString: Helmholtz-Centre Potsdam - GFZ German Research Centre for Geosciences
                  • description
                    • CharacterString: Helmholtz-Centre Potsdam - GFZ German Research Centre for Geosciences
          • role
            • CI_RoleCode (codeList=http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#CI_RoleCode codeListValue=pointOfContact): pointOfContact
      • dateStamp
        • Date: 2017-10-09
      • referenceSystemInfo
        • MD_ReferenceSystem
          • referenceSystemIdentifier
            • RS_Identifier
              • code
                • CharacterString: urn:ogc:def:crs:EPSG:4326
      • identificationInfo
        • MD_DataIdentification
          • citation
            • CI_Citation
              • title
                • CharacterString: Generating circumferential images of tomographic drill-core scans
              • date
                • CI_Date
                  • date
                    • Date: 2017-10-09
                  • dateType
                    • CI_DateTypeCode (codeList=http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#CI_DateTypeCode codeListValue=revision): revision
              • identifier
                • MD_Identifier
                  • code
                    • CharacterString: doi:10.5880/ICDP.5052.005
              • citedResponsibleParty
                • CI_ResponsibleParty
                  • individualName
                    • CharacterString: Mills, Steven
                  • organisationName
                    • CharacterString: University of Otago, Dunedin, New Zealand
                  • role
                    • CI_RoleCode (codeList=http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#CI_RoleCode codeListValue=author): author
              • citedResponsibleParty (xlink:href=http://orcid.org/0000-0001-6669-308X)
                • CI_ResponsibleParty
                  • individualName
                    • CharacterString: Williams, Jack
                  • organisationName
                    • CharacterString: University of Otago, Dunedin, New Zealand
                  • role
                    • CI_RoleCode (codeList=http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#CI_RoleCode codeListValue=author): author
              • citedResponsibleParty
                • CI_ResponsibleParty
                  • organisationName
                    • CharacterString: GFZ Data Services
                  • role
                    • CI_RoleCode (codeList=http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#CI_RoleCode codeListValue=publisher): publisher
          • abstract
            • CharacterString: This code (nwrap.ijm) can be used to generate an 'unrolled' circumferential image of a tomographic drill-core scan, such as an X-ray Computed Tomography (CT) scan. The resulting image is analogous to those produced by a DMT CoreScan system®. By comparing such images to geographically references borehole televiewer data, it may be used to reorientate drill-core back into geographic space (Williams et al. submitted). This code should be installed and run as a plugin on ImageJ/Fiji. Full instructions are given in the code and in the Appendix A of Williams et al. (submitted). Examples of unrolled CT scans can be found at Williams et al (2017, http://doi.org/10.5880/ICDP.5052.004).
          • status
            • MD_ProgressCode (codeList=http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#MD_ProgressCode codeListValue=Complete): Complete
          • pointOfContact
            • CI_ResponsibleParty
              • individualName
                • CharacterString: Williams, Jack
              • organisationName
                • CharacterString: University of Otago, Dunedin, New Zealand
              • contactInfo
                • CI_Contact
                  • address
                    • CI_Address
                      • electronicMailAddress
                        • CharacterString: jack.williams(_at_)otago.ac.nz
              • role
                • CI_RoleCode (codeList=http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#CI_RoleCode codeListValue=pointOfContact): pointOfContact
          • descriptiveKeywords
            • MD_Keywords
              • keyword
                • CharacterString: Drill-core reorientation
              • keyword
                • CharacterString: Tomographic core scanning
              • keyword
                • CharacterString: ICDP
              • keyword
                • CharacterString: International Continental Drilling Programme
              • keyword
                • CharacterString: DFDP
              • keyword
                • CharacterString: Deep Fault Drilling Project
          • descriptiveKeywords
            • MD_Keywords
              • keyword
                • CharacterString: drilling
              • thesaurusName
                • CI_Citation
                  • title
                    • CharacterString: GEMET - INSPIRE themes, version 1.0
                  • date
                    • CI_Date
                      • date (gco:nilReason=missing): 
                      • dateType
                        • CI_DateTypeCode (codeList=http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#CI_DateTypeCode codeListValue=publication): publication
          • descriptiveKeywords
            • MD_Keywords
              • keyword
                • CharacterString: EARTH SCIENCE SERVICES > DATA ANALYSIS AND VISUALIZATION > VISUALIZATION/IMAGE PROCESSING
              • thesaurusName
                • CI_Citation
                  • title
                    • CharacterString: NASA/GCMD Earth Science Keywords
                  • date
                    • CI_Date
                      • date (gco:nilReason=missing): 
                      • dateType
                        • CI_DateTypeCode (codeList=http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#CI_DateTypeCode codeListValue=publication): publication
          • resourceConstraints (xlink:href=https://www.apache.org/licenses/LICENSE-2.0)
            • MD_Constraints
              • useLimitation
                • CharacterString: Apache License, Version 2.0 (ALv2)
          • resourceConstraints
            • MD_LegalConstraints
              • accessConstraints
                • MD_RestrictionCode (codeList=http://www.isotc211.org/2005/resources/codeList.xml#MD_RestrictionCode codeListValue=otherRestrictions): 
              • otherConstraints
                • CharacterString: Apache License, Version 2.0 (ALv2)
          • resourceConstraints
            • MD_SecurityConstraints
              • classification
                • MD_ClassificationCode (codeList=http://www.isotc211.org/2005/resources/codeList.xml#MD_ClassificationCode codeListValue=unclassified): 
          • aggregationInfo
            • MD_AggregateInformation
              • aggregateDataSetIdentifier
                • RS_Identifier
                  • code
                    • CharacterString: 10.5880/ICDP.5052.004
                  • codeSpace
                    • CharacterString: DOI
              • associationType
                • DS_AssociationTypeCode (codeList=http://datacite.org/schema/kernel-4 codeListValue=IsPartOf): IsPartOf
          • aggregationInfo
            • MD_AggregateInformation
              • aggregateDataSetIdentifier
                • RS_Identifier
                  • code
                    • CharacterString: 10.1016/j.jsg.2016.07.006
                  • codeSpace
                    • CharacterString: DOI
              • associationType
                • DS_AssociationTypeCode (codeList=http://datacite.org/schema/kernel-4 codeListValue=References): References
          • aggregationInfo
            • MD_AggregateInformation
              • aggregateDataSetIdentifier
                • RS_Identifier
                  • code
                    • CharacterString: 10.5194/sd-22-35-2017
                  • codeSpace
                    • CharacterString: DOI
              • associationType
                • DS_AssociationTypeCode (codeList=http://datacite.org/schema/kernel-4 codeListValue=References): References
          • aggregationInfo
            • MD_AggregateInformation
              • aggregateDataSetIdentifier
                • RS_Identifier
                  • code
                    • CharacterString: 10.5194/se-2017-112
                  • codeSpace
                    • CharacterString: DOI
              • associationType
                • DS_AssociationTypeCode (codeList=http://datacite.org/schema/kernel-4 codeListValue=IsSupplementTo): IsSupplementTo
          • language
            • CharacterString: eng
          • characterSet
            • MD_CharacterSetCode (codeListValue=utf8 codeList=http://www.isotc211.org/2005/resources/codeList.xml#MD_CharacterSetCode): 
          • topicCategory
            • MD_TopicCategoryCode: geoscientificInformation
      • distributionInfo
        • MD_Distribution
          • transferOptions
            • MD_DigitalTransferOptions
              • onLine
                • CI_OnlineResource
                  • linkage
                    • URL: http://doi.org/10.5880/ICDP.5052.005
                  • protocol
                    • CharacterString: WWW:LINK-1.0-http--link
                  • name
                    • CharacterString: Data Access - DOI
                  • description
                    • CharacterString: Data Access - DOI
                  • function
                    • CI_OnLineFunctionCode (codeList=http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#CI_OnLineFunctionCode codeListValue=http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#CI_OnLineFunctionCode_information): information
      • dataQualityInfo
        • DQ_DataQuality
          • scope
            • DQ_Scope
              • level
                • MD_ScopeCode (codeListValue=dataset codeList=http://www.isotc211.org/2005/resources/codeList.xml#MD_ScopeCode): 

Files

License: Apache License, Version 2.0 (ALv2)

Software Description

Supplement to